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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_47256431_47261346_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
47256431 - 47261346
Intron Length:
4916

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGTAGT
5'SS Class:
strong_major
3'SS Sequence:
TTCTACTTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTACAA
U12 Branch Point Sequence:
TTTGTTCTACTT
Flanking Amino Acid:
QTDTKLHLILDYINGGELFT
Intron Amino Acid Position:
104

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.3
1.11
0.7
90.9
28.7
Major BPS
64.7
0.37
1
73
31.5
Major PPT
82.8
0.74
0.7
81.2
30.4
Minor 5ss
37.5
-1.4
2.8
51.6
44.9
Minor BPS
47.5
-0.1
2
71.16
41

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027002
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042492
47256306 - 47273470
17165