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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_47261566_47272941_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
47261566 - 47272941
Intron Length:
11376

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTAAGATGC
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTTCTTAAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAATAAT
U12 Branch Point Sequence:
TTCTCCCCACTC
Flanking Amino Acid:
FELLKVLGTGAYGKVFLVRK
Intron Amino Acid Position:
31

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.5
0.72
1
66.9
40
Major BPS
71.2
0.53
1
70.3
31.9
Major PPT
81.9
0.72
0.9
87.2
23.8
Minor 5ss
37.8
-1.4
3
42.6
44.5
Minor BPS
46.7
-0.2
2.1
63.04
42.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027002
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042492
47256306 - 47273470
17165