Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_47273014_47273451_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

47273014 - 47273451

Intron Length:

438

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ACA|GTGATGGGA

5'SS Class:

weak_major

3'SS Sequence:

TTTTTCCCTTCAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

ATTACAT

U12 Branch Point Sequence:

CATATCTGACAT

Flanking Amino Acid:

LFSVVHTNLTGHAEKV

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

54.4

0.11

1.1

37.2

Major BPS

73.9

0.59

30.2

Major PPT

91.5

0.93

0.6

89.8

18.5

Minor 5ss

25.4

-2.8

3.4

33.9

42.9

Minor BPS

44.8

-0.3

1.8

59.73

43.2

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000027002

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000042492

47256306 - 47273470

17165