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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_47299452_47301605_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
47299452 - 47301605
Intron Length:
2154

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATGTTT
5'SS Class:
strong_major
3'SS Sequence:
TCTTTCTGTTAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
ATTATTATAACA
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.6
0.77
1
81.4
33
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
73.7
0.53
1.1
79.1
33.3
Minor 5ss
42.7
-0.8
3.4
64.6
46.7
Minor BPS
58.3
0.26
1.6
71.08
34.5

Associated Gene:

Gene:
DGLUCY
Ensembl Gene ID:
ENSAPLG00000003796
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033734
47299237 - 47326873
27637