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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_47301718_47304382_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
47301718 - 47304382
Intron Length:
2665

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGAAA
5'SS Class:
strong_major
3'SS Sequence:
TCCACGATTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CAGTCAT
U12 Branch Point Sequence:
TCATTCCTACCT
Flanking Amino Acid:
SISNTSGMAEGYKQANIVIL
Intron Amino Acid Position:
35

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.6
0.98
0.8
84
28.8
Major BPS
64.7
0.37
1.2
67
39.8
Major PPT
70.3
0.46
1
65.6
39.6
Minor 5ss
31.6
-2.1
3.1
39
46.4
Minor BPS
51.7
0.13
2
72.85
44

Associated Gene:

Gene:
DGLUCY
Ensembl Gene ID:
ENSAPLG00000003796
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031317
47298456 - 47321725
23270
ENSAPLT00000024277
47295171 - 47521035
225865
ENSAPLT00000019097
47286771 - 47321725
34955
ENSAPLT00000037823
47295171 - 47326873
31703
ENSAPLT00000003907
47285011 - 47327306
42296
ENSAPLT00000033734
47299237 - 47326873
27637