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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_47305436_47307110_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
47305436 - 47307110
Intron Length:
1675

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTAGA
5'SS Class:
strong_major
3'SS Sequence:
TTTAAACTGACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTCTTTTAAACT
Flanking Amino Acid:
EQECNVSMYKTAVPCYSIST
Intron Amino Acid Position:
153

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.3
1.09
0.7
87.1
30
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
68.1
0.41
1.1
62.4
43.1
Minor 5ss
35.1
-1.7
2.7
42.8
44
Minor BPS
66.7
0.6
1.6
82.56
39.6

Associated Gene:

Gene:
DGLUCY
Ensembl Gene ID:
ENSAPLG00000003796
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019097
47286771 - 47321725
34955
ENSAPLT00000037823
47295171 - 47326873
31703
ENSAPLT00000003907
47285011 - 47327306
42296
ENSAPLT00000033734
47299237 - 47326873
27637
ENSAPLT00000031317
47298456 - 47321725
23270
ENSAPLT00000024277
47295171 - 47521035
225865