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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_47313323_47313773_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
47313323 - 47313773
Intron Length:
451

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGACAT
5'SS Class:
strong_major
3'SS Sequence:
TATTTTCCTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
AGTATCTGAATT
Flanking Amino Acid:
KKIIDDAVQLGILKRPVPLL
Intron Amino Acid Position:
397

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.1
0.97
0.8
80.7
33.7
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
82
0.72
0.8
74.8
35.8
Minor 5ss
33.6
-1.9
3.2
47.4
48
Minor BPS
59.3
0.37
1.4
72.79
37.8

Associated Gene:

Gene:
DGLUCY
Ensembl Gene ID:
ENSAPLG00000003796
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031317
47298456 - 47321725
23270
ENSAPLT00000024277
47295171 - 47521035
225865
ENSAPLT00000019097
47286771 - 47321725
34955
ENSAPLT00000037823
47295171 - 47326873
31703
ENSAPLT00000003907
47285011 - 47327306
42296
ENSAPLT00000033734
47299237 - 47326873
27637