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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_47313874_47315604_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
47313874 - 47315604
Intron Length:
1731

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTACATTTA
5'SS Class:
major
3'SS Sequence:
TGTCTCTAACCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTGAC
U12 Branch Point Sequence:
TGTTCTTTTACT
Flanking Amino Acid:
LCENGNRRRPRFDHLIAIER
Intron Amino Acid Position:
430

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.1
0.69
1
77.6
33.4
Major BPS
77.7
0.69
0.9
69.1
37.9
Major PPT
69.9
0.45
1
63.5
42
Minor 5ss
42.1
-0.9
3.2
58.2
46.4
Minor BPS
74.5
0.85
1.5
88.94
35.5

Associated Gene:

Gene:
DGLUCY
Ensembl Gene ID:
ENSAPLG00000003796
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024277
47295171 - 47521035
225865
ENSAPLT00000019097
47286771 - 47321725
34955
ENSAPLT00000037823
47295171 - 47326873
31703
ENSAPLT00000003907
47285011 - 47327306
42296
ENSAPLT00000033734
47299237 - 47326873
27637
ENSAPLT00000031317
47298456 - 47321725
23270