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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_47319910_47321399_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
47319910 - 47321399
Intron Length:
1490

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGGGAA
5'SS Class:
strong_major
3'SS Sequence:
CTTTCTTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
TTTTTTAACACT
Flanking Amino Acid:
DVEADFTIVAGVSNWGGYAI
Intron Amino Acid Position:
520

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.2
0.76
0.9
71
34.4
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
92.1
0.95
0.6
87.8
22.1
Minor 5ss
28.7
-2.4
3.5
34
43.2
Minor BPS
46.5
-0.1
2.3
75.66
41.6

Associated Gene:

Gene:
DGLUCY
Ensembl Gene ID:
ENSAPLG00000003796
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024277
47295171 - 47521035
225865
ENSAPLT00000019097
47286771 - 47321725
34955
ENSAPLT00000037823
47295171 - 47326873
31703
ENSAPLT00000003907
47285011 - 47327306
42296
ENSAPLT00000033734
47299237 - 47326873
27637
ENSAPLT00000031317
47298456 - 47321725
23270