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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_47321552_47326729_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
47321552 - 47326729
Intron Length:
5178

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATTTCC
5'SS Class:
strong_major
3'SS Sequence:
TTTATCTTTTAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
ATTCCTTTATCT
Flanking Amino Acid:
WLSALPSVTKEEKLLKALVQ
Intron Amino Acid Position:
571

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.5
0.84
0.9
77.7
31.1
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
79.2
0.66
1
83.5
31.7
Minor 5ss
41.5
-0.9
2.7
54.2
42.9
Minor BPS
68.3
0.65
1.6
83.89
36.8

Associated Gene:

Gene:
DGLUCY
Ensembl Gene ID:
ENSAPLG00000003796
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037823
47295171 - 47326873
31703
ENSAPLT00000033734
47299237 - 47326873
27637
ENSAPLT00000003907
47285011 - 47327306
42296