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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_47364586_47365832_R

Intron Information:

Intron Rank:
26
Intron Class:
minor-like
Intron Phase:
0
Intron Coordinates:
47364586 - 47365832
Intron Length:
1247

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTATCCGTT
5'SS Class:
weak_minor
3'SS Sequence:
TTTTTCACACCAG|G
3'SS Class:
minor_BPS
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TTGTCATTAATG
Flanking Amino Acid:
RRSTSLYIPRDTSNNRDDLL
Intron Amino Acid Position:
1639

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
60.3
0.24
1.3
59.7
45.2
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
78.6
0.64
0.9
72.4
37.6
Minor 5ss
62.2
0.41
2.8
72.7
44.5
Minor BPS
69
0.46
1.7
72.52
40.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004247
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029880
47362253 - 47371832
9580
ENSAPLT00000017415
47362253 - 47416527
54275
ENSAPLT00000037638
47362253 - 47416527
54275
ENSAPLT00000032087
47363572 - 47416527
52956