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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_47364586_47367031_R

Intron Information:

Intron Rank:
26
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
47364586 - 47367031
Intron Length:
2446

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGC|GTAAGTAGT
5'SS Class:
major
3'SS Sequence:
TTTTTCACACCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TTGTCATTAATG
Flanking Amino Acid:
EESSRLSPPSDTSNNRDDLL
Intron Amino Acid Position:
1591

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.8
0.49
1.3
72.7
44.5
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
78.6
0.64
0.9
72.4
37.6
Minor 5ss
38.4
-1.3
2.8
47
41.7
Minor BPS
69
0.46
1.7
72.52
40.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004247
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004446
47363572 - 47416527
52956