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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_47366046_47367031_R

Intron Information:

Intron Rank:
25
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
47366046 - 47367031
Intron Length:
986

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGC|GTAAGTAGT
5'SS Class:
major
3'SS Sequence:
TGTTCCTTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
CTTTCTGTCATC
Flanking Amino Acid:
EESSRLSPPSRRRSLGSEMI
Intron Amino Acid Position:
1568

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.8
0.49
1.3
72.7
44.5
Major BPS
100
1.24
0.5
100
0
Major PPT
87.4
0.84
0.7
84.9
29.9
Minor 5ss
38.4
-1.3
2.8
47
41.7
Minor BPS
47.4
-0.2
2.3
65.01
41.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004247
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032087
47363572 - 47416527
52956
ENSAPLT00000029880
47362253 - 47371832
9580
ENSAPLT00000017415
47362253 - 47416527
54275
ENSAPLT00000037638
47362253 - 47416527
54275