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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_47367334_47367989_R

Intron Information:

Intron Rank:
25
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
47367334 - 47367989
Intron Length:
656

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAGCTT
5'SS Class:
strong_major
3'SS Sequence:
TGGTTTTTCTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
ACTTCAATGATA
Flanking Amino Acid:
SSSSSPLNLKGSLDHIHGRT
Intron Amino Acid Position:
1490

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.5
0.74
1
75.8
39.8
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
81.9
0.72
0.9
80.5
37
Minor 5ss
36
-1.6
3.6
55.8
48.4
Minor BPS
48.8
-0.1
1.9
62.68
37.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004247
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037638
47362253 - 47416527
54275
ENSAPLT00000032087
47363572 - 47416527
52956
ENSAPLT00000029880
47362253 - 47371832
9580
ENSAPLT00000004446
47363572 - 47416527
52956