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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_47367334_47368857_R

Intron Information:

Intron Rank:
24
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
47367334 - 47368857
Intron Length:
1524

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGCTTG
5'SS Class:
strong_major
3'SS Sequence:
TGGTTTTTCTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
ACTTCAATGATA
Flanking Amino Acid:
EVEFASTRQHGSLDHIHGRT
Intron Amino Acid Position:
1467

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.1
0.76
1
71.5
41.1
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
81.9
0.72
0.9
80.5
37
Minor 5ss
47.6
-0.2
2.8
61.4
44.4
Minor BPS
48.8
-0.1
1.9
62.68
37.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004247
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017415
47362253 - 47416527
54275