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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_47369512_47371405_R

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
47369512 - 47371405
Intron Length:
1894

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGC|GTATGTATA
5'SS Class:
weak_major
3'SS Sequence:
CTCTCCCCCTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
ATTTATTTACCT
Flanking Amino Acid:
MAYSLLLVDLKQKRN
Intron Amino Acid Position:
6

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
64.5
0.34
1.3
70.6
41.3
Major BPS
100
1.24
0.5
100
0
Major PPT
76.1
0.59
0.7
73.2
25
Minor 5ss
46.3
-0.4
2.5
54.9
42.7
Minor BPS
63.6
0.5
1.8
83.17
37.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004247
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029880
47362253 - 47371832
9580