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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_47369512_47373306_R

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
47369512 - 47373306
Intron Length:
3795

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAACAAT
5'SS Class:
strong_major
3'SS Sequence:
CTCTCCCCCTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
ATTTATTTACCT
Flanking Amino Acid:
RENPAGSSNKVLVDLKQKRN
Intron Amino Acid Position:
1383

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.6
0.77
1
80.3
34.3
Major BPS
100
1.24
0.5
100
0
Major PPT
76.1
0.59
0.7
73.2
25
Minor 5ss
40.4
-1.1
3.1
56.9
47.4
Minor BPS
63.6
0.5
1.8
83.17
37.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004247
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032087
47363572 - 47416527
52956
ENSAPLT00000017415
47362253 - 47416527
54275
ENSAPLT00000004446
47363572 - 47416527
52956
ENSAPLT00000037638
47362253 - 47416527
54275