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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_47375110_47375710_R

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
47375110 - 47375710
Intron Length:
601

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTAAGAAAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCCTCACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCAGAT
U12 Branch Point Sequence:
TTTTTCCTCACA
Flanking Amino Acid:
EQYHEEQKQYIDKLNALKRH
Intron Amino Acid Position:
1272

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81
0.73
1
79
29.3
Major BPS
61.5
0.29
1.1
56.9
40.5
Major PPT
88.9
0.88
0.6
84.3
23.7
Minor 5ss
35.2
-1.7
3
45.1
42.9
Minor BPS
59.6
0.3
2.1
79.54
36.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004247
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037638
47362253 - 47416527
54275
ENSAPLT00000032087
47363572 - 47416527
52956
ENSAPLT00000017415
47362253 - 47416527
54275
ENSAPLT00000004446
47363572 - 47416527
52956