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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_47375857_47376100_R

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
47375857 - 47376100
Intron Length:
244

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTAGC
5'SS Class:
strong_major
3'SS Sequence:
TCTTGTTTAATAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GATTCAT
U12 Branch Point Sequence:
TCTTGTTTAATA
Flanking Amino Acid:
SLTKLDNHCELLSRLKGNLE
Intron Amino Acid Position:
1224

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.5
0.98
0.7
81.3
32.8
Major BPS
74.4
0.61
1.2
77.7
37.1
Major PPT
76.4
0.59
0.9
73.3
36
Minor 5ss
30.6
-2.2
2.6
36.7
40.4
Minor BPS
65.9
0.5
1.7
74.34
38.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004247
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017415
47362253 - 47416527
54275
ENSAPLT00000004446
47363572 - 47416527
52956
ENSAPLT00000037638
47362253 - 47416527
54275
ENSAPLT00000032087
47363572 - 47416527
52956