Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_47376288_47377772_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

47376288 - 47377772

Intron Length:

1485

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTATGGCTC

5'SS Class:

strong_major

3'SS Sequence:

TTTTTGTGTTTAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TCTTCAT

U12 Branch Point Sequence:

TTCTTCATAAGT

Flanking Amino Acid:

ENQKLREELDRVNFLHSQLK

Intron Amino Acid Position:

1161

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.4

0.74

69.5

41.1

Major BPS

87.4

0.93

0.9

87.9

29.5

Major PPT

81.3

0.7

0.9

81.2

36.5

Minor 5ss

41.4

-1

3.3

58.6

46.2

Minor BPS

59.3

0.37

1.9

80.09

42.1

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000004247

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000017415

47362253 - 47416527

54275

ENSAPLT00000004446

47363572 - 47416527

52956

ENSAPLT00000037638

47362253 - 47416527

54275

ENSAPLT00000032087

47363572 - 47416527

52956