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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_47377917_47382675_R

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
47377917 - 47382675
Intron Length:
4759

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGCTCA
5'SS Class:
strong_major
3'SS Sequence:
TTCTCTTTTGTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AGATTAT
U12 Branch Point Sequence:
ATTATGCTACTT
Flanking Amino Acid:
LDLEHKGLGERYNSLMKHKA
Intron Amino Acid Position:
1113

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.5
0.74
1
70.3
36.5
Major BPS
60.8
0.27
1.2
51.8
43.6
Major PPT
87.6
0.85
0.6
84.4
23.5
Minor 5ss
50.9
0.03
2.3
65.5
45.7
Minor BPS
40.6
-0.6
2.4
62.99
41.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004247
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004446
47363572 - 47416527
52956
ENSAPLT00000037638
47362253 - 47416527
54275
ENSAPLT00000032087
47363572 - 47416527
52956
ENSAPLT00000017415
47362253 - 47416527
54275