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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_47382954_47384093_R

Intron Information:

Intron Rank:
16
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
47382954 - 47384093
Intron Length:
1140

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCAGGACA
5'SS Class:
major
3'SS Sequence:
TGAGAAACTTTAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TGATTTTTATTT
Flanking Amino Acid:
ALQTQTAKLQVENSTLSSQS
Intron Amino Acid Position:
1021

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.9
0.61
1.3
72.3
39
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
55.4
0.12
1
49.6
43.6
Minor 5ss
28
-2.5
2.8
32.6
41.8
Minor BPS
58.8
0.35
1.5
72.71
38.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004247
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017415
47362253 - 47416527
54275
ENSAPLT00000004446
47363572 - 47416527
52956
ENSAPLT00000037638
47362253 - 47416527
54275
ENSAPLT00000032087
47363572 - 47416527
52956