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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_47384802_47385363_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
47384802 - 47385363
Intron Length:
562

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGAGTT
5'SS Class:
strong_major
3'SS Sequence:
TTGGCTTATGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTAAA
U12 Branch Point Sequence:
GTTGGCTTATGC
Flanking Amino Acid:
NQQLQNDLNMVKKEFDALKQ
Intron Amino Acid Position:
904

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.6
0.84
0.9
80.7
31.6
Major BPS
75.2
0.63
1.1
75.9
36.3
Major PPT
75.1
0.56
1
69.9
40.6
Minor 5ss
36.5
-1.5
3.6
53.2
45
Minor BPS
44.5
-0.4
2.3
58.42
46.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004247
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032087
47363572 - 47416527
52956
ENSAPLT00000017415
47362253 - 47416527
54275
ENSAPLT00000004446
47363572 - 47416527
52956
ENSAPLT00000037638
47362253 - 47416527
54275