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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_47386706_47389025_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
47386706 - 47389025
Intron Length:
2320

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGCAAA
5'SS Class:
strong_major
3'SS Sequence:
AGTCCTGTTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTAAT
U12 Branch Point Sequence:
TAATCGTTTAGT
Flanking Amino Acid:
DKRTLATLREDLVLEKLKSQ
Intron Amino Acid Position:
814

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.1
0.97
0.8
83.2
30.8
Major BPS
77.9
0.69
0.8
75.9
25
Major PPT
72.6
0.51
1
64.8
40.8
Minor 5ss
38.7
-1.3
2.8
48.1
47.6
Minor BPS
46.5
-0.2
2.5
69.7
46.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004247
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032087
47363572 - 47416527
52956
ENSAPLT00000017415
47362253 - 47416527
54275
ENSAPLT00000004446
47363572 - 47416527
52956
ENSAPLT00000037638
47362253 - 47416527
54275