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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_47391654_47395178_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
47391654 - 47395178
Intron Length:
3525

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATCCTT
5'SS Class:
strong_major
3'SS Sequence:
TCTCTCCACACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GACTGAT
U12 Branch Point Sequence:
GTTCTCTCCACA
Flanking Amino Acid:
EKENQQLSKKIEKLQNQIEK
Intron Amino Acid Position:
411

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.2
0.71
1
74.6
41.7
Major BPS
65.8
0.39
1.2
57.3
41.7
Major PPT
74.4
0.55
0.8
69
30.5
Minor 5ss
43.9
-0.7
3.2
65.5
45.6
Minor BPS
49
-0
2
65.67
40.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004247
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032087
47363572 - 47416527
52956
ENSAPLT00000017415
47362253 - 47416527
54275
ENSAPLT00000004446
47363572 - 47416527
52956
ENSAPLT00000037638
47362253 - 47416527
54275