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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_47404481_47404964_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
47404481 - 47404964
Intron Length:
484

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGGTGG
5'SS Class:
strong_major
3'SS Sequence:
TCATGTCTGTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTTAT
U12 Branch Point Sequence:
TATCCCTCATGT
Flanking Amino Acid:
TLELQKIKQENIHLASDARS
Intron Amino Acid Position:
200

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.5
0.79
0.9
66.5
41.6
Major BPS
76.2
0.65
1.1
65.7
43.2
Major PPT
70.5
0.46
1
69.4
41.5
Minor 5ss
30.7
-2.2
3.2
37.8
47.1
Minor BPS
48.4
-0
2.1
71.27
45

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004247
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037638
47362253 - 47416527
54275
ENSAPLT00000017415
47362253 - 47416527
54275
ENSAPLT00000004446
47363572 - 47416527
52956