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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_47408138_47409810_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
47408138 - 47409810
Intron Length:
1673

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAACATT
5'SS Class:
major
3'SS Sequence:
TTTCTTTTAACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTAGGAT
U12 Branch Point Sequence:
TTTCTTTTAACA
Flanking Amino Acid:
LLLVLGCAVQCERKEEFIER
Intron Amino Acid Position:
36

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.5
0.69
0.9
80.2
34.3
Major BPS
59.7
0.24
1.5
59.7
46.7
Major PPT
87.2
0.84
0.8
84.6
28.7
Minor 5ss
39.2
-1.2
3.2
56.9
47.4
Minor BPS
78.7
0.9
1
84.25
28.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004247
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032087
47363572 - 47416527
52956
ENSAPLT00000017415
47362253 - 47416527
54275
ENSAPLT00000004446
47363572 - 47416527
52956
ENSAPLT00000037638
47362253 - 47416527
54275