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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_47468683_47469174_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
47468683 - 47469174
Intron Length:
492

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGTGAT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCTCTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TGGTTTTTATTT
Flanking Amino Acid:
PISKFMERKKLKESEEKEVL
Intron Amino Acid Position:
585

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.3
0.83
1
83.5
27.9
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
93.2
0.97
0.6
89.1
19.8
Minor 5ss
36.8
-1.5
3.4
53.7
43.8
Minor BPS
57.8
0.32
1.6
71.48
40.5

Associated Gene:

Gene:
PPP4R3A
Ensembl Gene ID:
ENSAPLG00000004317
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004485
47466926 - 47499711
32786