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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_47475126_47476448_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
47475126 - 47476448
Intron Length:
1323

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACGCTG
5'SS Class:
major
3'SS Sequence:
GGTTTTATTATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTTAT
U12 Branch Point Sequence:
ATATGTTTAACT
Flanking Amino Acid:
ANTTEDKPSKDDFQTAQLLA
Intron Amino Acid Position:
364

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.9
0.59
1.2
64.3
47.1
Major BPS
78.7
0.71
1.2
71.7
44.6
Major PPT
76
0.58
0.9
70
40.3
Minor 5ss
39.9
-1.1
3.4
55.8
48.4
Minor BPS
68.6
0.66
1.7
83.08
38

Associated Gene:

Gene:
PPP4R3A
Ensembl Gene ID:
ENSAPLG00000004317
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004485
47466926 - 47499711
32786