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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_47476552_47476644_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
47476552 - 47476644
Intron Length:
93

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TTTAATTCTCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
GTTTTTTTAATT
Flanking Amino Acid:
DPENMLATANKTEKTEFLGF
Intron Amino Acid Position:
330

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.9
0.85
0.9
85.3
25.4
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
78.4
0.64
0.9
70.6
40.7
Minor 5ss
37.5
-1.4
2.8
46.9
41.8
Minor BPS
79
0.99
1
87.87
31.1

Associated Gene:

Gene:
PPP4R3A
Ensembl Gene ID:
ENSAPLG00000004317
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004485
47466926 - 47499711
32786