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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_47478988_47487184_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
47478988 - 47487184
Intron Length:
8197

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTTTG
5'SS Class:
strong_major
3'SS Sequence:
TTTGCCTTTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTCAA
U12 Branch Point Sequence:
TGTCAAATAAAC
Flanking Amino Acid:
NKVEIVGMLQEDEKFLTDLF
Intron Amino Acid Position:
182

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.7
1.1
0.7
87.9
29.3
Major BPS
75.6
0.64
1.1
77.7
37.1
Major PPT
82.3
0.73
0.8
77.5
31.2
Minor 5ss
43.8
-0.7
2.8
57.8
46.8
Minor BPS
43.4
-0.5
2
58.18
39

Associated Gene:

Gene:
PPP4R3A
Ensembl Gene ID:
ENSAPLG00000004317
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004485
47466926 - 47499711
32786