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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_47487803_47490060_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
47487803 - 47490060
Intron Length:
2258

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTTTG
5'SS Class:
strong_major
3'SS Sequence:
TCCTGTTTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
TTTTTGAAAACA
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.7
1.1
0.7
87.9
29.3
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
84.6
0.78
0.8
78.8
33.2
Minor 5ss
43.8
-0.7
2.8
57.8
46.8
Minor BPS
46.8
-0.2
2.5
71.45
40.9

Associated Gene:

Gene:
PPP4R3A
Ensembl Gene ID:
ENSAPLG00000004317
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004485
47466926 - 47499711
32786