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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_47490160_47499655_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
47490160 - 47499655
Intron Length:
9496

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAATGTG
5'SS Class:
strong_major
3'SS Sequence:
CCTGTCTTTAAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTAAA
U12 Branch Point Sequence:
ATTGCCTGAAAC
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.5
0.86
0.9
78.6
35.9
Major BPS
77.8
0.69
1
78.2
31.8
Major PPT
70.5
0.46
1
70
34.3
Minor 5ss
35.7
-1.6
3.4
48.7
47.5
Minor BPS
60.6
0.31
1.7
71.35
39.3

Associated Gene:

Gene:
PPP4R3A
Ensembl Gene ID:
ENSAPLG00000004317
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004485
47466926 - 47499711
32786