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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_47564083_47566438_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
47564083 - 47566438
Intron Length:
2356

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTGGTTTC
5'SS Class:
major
3'SS Sequence:
TTTCTTGCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
CTCTTTTTATTT
Flanking Amino Acid:
SVRRKHFLGQIWISSDSTNS
Intron Amino Acid Position:
454

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.5
0.6
1.2
74.3
37.2
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
85.6
0.8
0.8
80.9
31.1
Minor 5ss
39.7
-1.2
3
52.8
44.4
Minor BPS
56.7
0.29
1.6
70.13
42.3

Associated Gene:

Gene:
TC2N
Ensembl Gene ID:
ENSAPLG00000005130
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005302
47563704 - 47584819
21116