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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_47566639_47567123_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
47566639 - 47567123
Intron Length:
485

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAT|GTAAGTTAC
5'SS Class:
strong_major
3'SS Sequence:
CACTTTTTGATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TCTTTTTCACTT
Flanking Amino Acid:
LPISSTPLSLYFFVKVGMFS
Intron Amino Acid Position:
387

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.6
0.82
1
80.5
27.7
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
70.7
0.47
1
68.1
37.3
Minor 5ss
42.9
-0.8
2.8
57.1
40.8
Minor BPS
50.4
0.09
1.8
70.72
41.5

Associated Gene:

Gene:
TC2N
Ensembl Gene ID:
ENSAPLG00000005130
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005302
47563704 - 47584819
21116