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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_47569284_47570026_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
47569284 - 47570026
Intron Length:
743

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGTAGA
5'SS Class:
strong_major
3'SS Sequence:
TCTTTCTTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTAAA
U12 Branch Point Sequence:
TCTTAAAAAAAC
Flanking Amino Acid:
FKSSAKEGCNDIEFMETFVF
Intron Amino Acid Position:
285

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.3
0.81
1
80.1
34.8
Major BPS
77.8
0.69
1
78.2
31.8
Major PPT
89.2
0.88
0.6
88.7
20.6
Minor 5ss
37.5
-1.4
2.8
47
41.7
Minor BPS
40
-0.7
2.2
54.95
42.4

Associated Gene:

Gene:
TC2N
Ensembl Gene ID:
ENSAPLG00000005130
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005302
47563704 - 47584819
21116