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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_47572729_47576387_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
47572729 - 47576387
Intron Length:
3659

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGAAGA
5'SS Class:
strong_major
3'SS Sequence:
TTTGTCTCTTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACATGAT
U12 Branch Point Sequence:
AATGACATGATA
Flanking Amino Acid:
KSDNRKLYGSVNDLRTSALP
Intron Amino Acid Position:
156

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.1
0.87
0.8
76.9
33.7
Major BPS
63.3
0.33
1.1
53.7
41.6
Major PPT
83.5
0.75
0.7
82.1
30
Minor 5ss
27.4
-2.6
2.7
31.6
42.2
Minor BPS
45.3
-0.3
1.8
55.37
37.1

Associated Gene:

Gene:
TC2N
Ensembl Gene ID:
ENSAPLG00000005130
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005302
47563704 - 47584819
21116