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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_47580430_47581086_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
47580430 - 47581086
Intron Length:
657

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATC|GTAAGTTCC
5'SS Class:
major
3'SS Sequence:
TCTTTATTTTTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
TGCTCTTTATTT
Flanking Amino Acid:
CFYAEKEKNDPVSMVQESEA
Intron Amino Acid Position:
23

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.2
0.5
1.3
68.5
37.5
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
86.4
0.82
0.7
85.4
28
Minor 5ss
43
-0.8
2.7
54.7
36.6
Minor BPS
63.5
0.5
1.6
76.04
41.4

Associated Gene:

Gene:
TC2N
Ensembl Gene ID:
ENSAPLG00000005130
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005302
47563704 - 47584819
21116