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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_47613483_47614948_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
47613483 - 47614948
Intron Length:
1466

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTAAGTCTG
5'SS Class:
strong_major
3'SS Sequence:
GTTTTGTGTACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTCAC
U12 Branch Point Sequence:
GAAATCTCACCT
Flanking Amino Acid:
GNEGREFYMRQTGPISATLV
Intron Amino Acid Position:
392

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.1
0.83
1
72.7
44.5
Major BPS
76.2
0.65
0.9
77.4
26.5
Major PPT
77.9
0.63
1
72.2
42.7
Minor 5ss
37.4
-1.4
3
42.1
44.4
Minor BPS
46.1
-0.2
1.8
59.9
42.8

Associated Gene:

Gene:
FBLN5
Ensembl Gene ID:
ENSAPLG00000005285
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005490
47613321 - 47658340
45020