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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_47615145_47617671_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
47615145 - 47617671
Intron Length:
2527

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTGAGTACC
5'SS Class:
strong_major
3'SS Sequence:
ATCTCTCTTTTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTAAC
U12 Branch Point Sequence:
GAATTTGTAACC
Flanking Amino Acid:
CEDPYIQINENRCMCPAENP
Intron Amino Acid Position:
326

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.1
0.76
0.9
77.7
30.1
Major BPS
74.5
0.61
1.1
75.6
36.6
Major PPT
79.8
0.67
0.7
77.9
30.2
Minor 5ss
33.3
-1.9
2.7
38.5
32.5
Minor BPS
49.6
-0
2
60.52
38.6

Associated Gene:

Gene:
FBLN5
Ensembl Gene ID:
ENSAPLG00000005285
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005490
47613321 - 47658340
45020