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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_47617799_47618328_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
47617799 - 47618328
Intron Length:
530

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAACA
5'SS Class:
strong_major
3'SS Sequence:
TTTTGTGTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTGT
U12 Branch Point Sequence:
TTTCTCTTGTTT
Flanking Amino Acid:
NLLDDSRSCQDINECETRNF
Intron Amino Acid Position:
284

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.2
0.99
0.8
83.4
27.8
Major BPS
38.1
-0.7
4.3
71.7
44.6
Major PPT
82.6
0.73
0.9
81.2
36.5
Minor 5ss
33.8
-1.9
2.9
41.4
44.7
Minor BPS
46.1
-0.2
3.4
79.75
36.6

Associated Gene:

Gene:
FBLN5
Ensembl Gene ID:
ENSAPLG00000005285
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005490
47613321 - 47658340
45020