About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_47618452_47621008_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
47618452 - 47621008
Intron Length:
2557

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTAACTGTC
5'SS Class:
major
3'SS Sequence:
TTTACCGTTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAC
U12 Branch Point Sequence:
AAACTCTAAACT
Flanking Amino Acid:
ELEADGVNCSDMDECSFSEF
Intron Amino Acid Position:
243

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.1
0.57
1.2
70.9
39.9
Major BPS
77.8
0.69
0.9
69.4
37.3
Major PPT
79.7
0.67
0.9
73.3
36.9
Minor 5ss
43.3
-0.7
3.2
61.8
43
Minor BPS
56
0.27
1.7
69.86
40.5

Associated Gene:

Gene:
FBLN5
Ensembl Gene ID:
ENSAPLG00000005285
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005490
47613321 - 47658340
45020