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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_47622269_47626273_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
47622269 - 47626273
Intron Length:
4005

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAAAACC
5'SS Class:
strong_major
3'SS Sequence:
TTTTCATTTGTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
ATCACTCTAATT
Flanking Amino Acid:
GYWLLEGQCLDIDECRYGYC
Intron Amino Acid Position:
164

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.2
0.76
0.9
74.9
33.2
Major BPS
100
1.24
0.5
100
0
Major PPT
86
0.81
0.7
81.9
28.7
Minor 5ss
34.1
-1.8
3
44.4
43.1
Minor BPS
54.9
0.23
1.7
71.56
39.8

Associated Gene:

Gene:
FBLN5
Ensembl Gene ID:
ENSAPLG00000005285
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005490
47613321 - 47658340
45020