Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_47626397_47652215_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

47626397 - 47652215

Intron Length:

25819

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CTG|GTAAGTAGT

5'SS Class:

strong_major

3'SS Sequence:

TTCTCTGTTGCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTCTCAT

U12 Branch Point Sequence:

ATTGCTTTATTT

Flanking Amino Acid:

YQLDENNQCADIDECASDSH

Intron Amino Acid Position:

123

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

89.4

0.93

0.8

83.5

Major BPS

94.9

1.12

0.6

93.9

14.7

Major PPT

84.9

0.78

0.8

80.1

31.9

Minor 5ss

37.6

-1.4

2.8

48.3

42.5

Minor BPS

61.2

0.43

1.7

77.64

39.7

Associated Gene:

Gene:

FBLN5

Ensembl Gene ID:

ENSAPLG00000005285

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000005490

47613321 - 47658340

45020