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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_47652459_47653603_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
47652459 - 47653603
Intron Length:
1145

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAGGATTT
5'SS Class:
strong_major
3'SS Sequence:
AATTTCCTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACTTAAC
U12 Branch Point Sequence:
ACTCACTTAACT
Flanking Amino Acid:
DLDRASGQCLDIDECRTIPE
Intron Amino Acid Position:
42

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.3
0.81
0.9
81.6
33.2
Major BPS
68.3
0.45
1
69.6
32.8
Major PPT
80.3
0.68
0.9
70.8
40.1
Minor 5ss
42.5
-0.8
3.4
64.3
47.2
Minor BPS
69.8
0.7
1.5
81.26
39.8

Associated Gene:

Gene:
FBLN5
Ensembl Gene ID:
ENSAPLG00000005285
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005490
47613321 - 47658340
45020