Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_47684298_47684641_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

47684298 - 47684641

Intron Length:

344

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGGGTTGA

5'SS Class:

strong_major

3'SS Sequence:

ACCCTCTCTTCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

AACTCAT

U12 Branch Point Sequence:

CTTTTCTTACCC

Flanking Amino Acid:

NLEEKVVSLQESLGEANAAL

Intron Amino Acid Position:

1727

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.3

0.74

71.1

37.5

Major BPS

78.3

0.7

0.8

77.7

26.1

Major PPT

76.7

0.6

0.8

73.2

Minor 5ss

32.7

-2

3.1

40.4

45.8

Minor BPS

69.3

0.59

1.6

77.35

39.1

Associated Gene:

Gene:

TRIP11

Ensembl Gene ID:

ENSAPLG00000005484

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000026329

47674163 - 47703647

29485

ENSAPLT00000005690

47674572 - 47703647

29076