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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_47691444_47691950_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
47691444 - 47691950
Intron Length:
507

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGCAG
5'SS Class:
strong_major
3'SS Sequence:
TGATCTTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTGAT
U12 Branch Point Sequence:
TTCCTCTGATCT
Flanking Amino Acid:
IEKFKNQALQVTKVQTLNGE
Intron Amino Acid Position:
833

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.3
0.88
0.9
69.6
42.7
Major BPS
79
0.72
1
69
38.9
Major PPT
83.3
0.75
0.9
80.9
36.4
Minor 5ss
30.1
-2.3
3.2
37.6
47.1
Minor BPS
53.6
0.19
1.7
73.9
42.8

Associated Gene:

Gene:
TRIP11
Ensembl Gene ID:
ENSAPLG00000005484
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026329
47674163 - 47703647
29485