Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_47692902_47693791_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

47692902 - 47693791

Intron Length:

890

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAATAAAC

5'SS Class:

strong_major

3'SS Sequence:

GTGTTCATTTCAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TGTTCAT

U12 Branch Point Sequence:

CTTTCCTGATAA

Flanking Amino Acid:

LDKQNQEATQRVITLKEQLS

Intron Amino Acid Position:

516

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.1

0.76

31.4

Major BPS

84.8

0.86

85.7

34.9

Major PPT

0.63

0.9

74.5

Minor 5ss

33.8

-1.8

2.9

43.3

43.9

Minor BPS

54.8

0.15

1.9

69.67

42.3

Associated Gene:

Gene:

TRIP11

Ensembl Gene ID:

ENSAPLG00000005484

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000026329

47674163 - 47703647

29485

ENSAPLT00000005690

47674572 - 47703647

29076