Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_47697079_47697789_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

47697079 - 47697789

Intron Length:

711

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAGATGA

5'SS Class:

strong_major

3'SS Sequence:

ACAATATTTTTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ATTTTAC

U12 Branch Point Sequence:

GTTTCTCTAACA

Flanking Amino Acid:

EICKLQNTIKELKQNLSQEI

Intron Amino Acid Position:

224

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

90.6

0.96

0.8

77.8

33.3

Major BPS

77.8

0.69

0.9

69.4

37.3

Major PPT

0.38

63.1

42.3

Minor 5ss

37.3

-1.4

47.8

47.6

Minor BPS

70.5

0.64

1.6

81.02

34.1

Associated Gene:

Gene:

TRIP11

Ensembl Gene ID:

ENSAPLG00000005484

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000026329

47674163 - 47703647

29485

ENSAPLT00000005690

47674572 - 47703647

29076