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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_47711900_47713227_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
47711900 - 47713227
Intron Length:
1328

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAAGTAA
5'SS Class:
strong_major
3'SS Sequence:
ATTGACTTGACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTGAC
U12 Branch Point Sequence:
AATGCCTTAAAT
Flanking Amino Acid:
GEETAQSREQRLPRSDVDQA
Intron Amino Acid Position:
198

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.4
0.74
1
74.3
31.9
Major BPS
78.7
0.71
0.9
69.3
37.7
Major PPT
67.5
0.39
1.1
61.7
43.7
Minor 5ss
35.4
-1.7
3.3
46.2
49.1
Minor BPS
70.5
0.72
1.5
81.26
39.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006002
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023211
47711152 - 47722173
11022
ENSAPLT00000020841
47711161 - 47718236
7076
ENSAPLT00000006264
47711161 - 47721553
10393